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Research paper Botanica Pacifica. A journal of plant science and conservation 2026. Preprint Article first published online: 20 AUG 2026 | DOI: 10.17581/bp.2026.15209 Estimation of population divergence time and potential distribution of the protected evergreen Rhododendron brachycarpum in Russia Maria A. Polezhaeva 1 1 Institute of Plant and Animal Ecology UB RAS, Ekaterinburg, Russia 2 Sikhote-Alin State Nature Biosphere Reserve named after K.G. Abramov, Terney, Primorsky Krai, Russia Rhododendron brachycarpum is a highly ornamental and pharmacologically valuable species with small populations in Russia. In this study, we used previously obtained data on the variability of nuclear SSR markers to analyze the divergence history of two R. brachycarpum populations existing in Russia. Approximate Bayesian computation (ABC) analysis revealed that the divergence between the identified “Korean” and “Japanese” large genetic clusters occurred approximately 436 thousand years ago. The separation of the R. brachycarpum populations from Primorsky Krai and Iturup Island from the “Korean” and “Japanese” clusters, respectively, occurred approximately 164 thousand years ago. Using the MaxEnt program, we reconstructed the potential distribution of the species during the LIG, the LGM, and future periods (2061–2080). It was shown that the species contracted its range during periods of warming and expanded its range during periods of cooling. Reduced variability and small numbers of populations in the territory of the Russian Federation require special attention to the conservation of the species, including biological methods of combating pathogenic organisms and the possible enrichment of the genetic variability of natural populations through in situ introduction of genotypes from the species' main range. Полежаева М.А.*, Шуваев Д.Н., Бондарчук С.Н. Оценка времени расхождения популяций и потенциальное распространение охраняемого вечнозеленого вида Rhododendron brachycarpum в России. Rhododendron brachycarpum – высокодекоративный и фармакологически ценный вид с малочисленными популяциями на территории РФ. В настоящем исследовании для анализа истории дивергенции двух существующих на территории России популяций R. brachycarpum были использованы данные изменчивости ядерных SSR маркеров, полученные нами ранее. Анализ DIYABC показал, что дивергенция между выявленными “Корейским” и “Японским” крупными генетическими кластерами произошла примерно 436 тыс. лет назад. Отделение популяции R. brachycarpum из Приморского края от “Корейского” кластера и популяции с о-ва Итуруп от “Японского” кластера, соответственно, произошло около 164 тыс. л.н. С помощью программы MaxEnt реконструировано потенциальное распространение вида в период LIG, LGM, а также в будущем в 2061–2080 гг. Показано, что в периоды потепления вид сокращал, а в периоды похолодания расширял свой ареал. Сниженная изменчивость и малочисленность популяций на территории РФ требует особого внимания к охране вида, включая биологические методы борьбы с патогенными организмами и возможного обогащения генетической изменчивости природных популяций за счет интродукции in-situ генотипов вида из основных частей ареала. Keywords: Ericaceae, Rhododendron brachycarpum subsp. fauriei, the Kuril Islands, Sikhote-Alin, protected species, genetic divergence, ecological modeling, Курильские острова, Сихотэ-Алинь, охраняемый вид, генетическая дивергенция, экологическое моделирование PDF SUPPLEMENTARY MATERIALS: DYABC analyses; Occurrence data; SDM analysis References Aleksandrova, M.S. 1975. Rhododendrons of the natural flora of the USSR. Nauka, Moscow, 112 pp. (in Russian). [Александрова М.С. 1975. Рододендроны природной флоры СССР. Москва: Наука. 112 с.]. Aiello-Lammens, M.E., R.A. Boria, A. Radosavljevic & R.P. Anderson 2015. spThin: an R package for spatial thinning of species occurrence records for use in ecological niche models. Ecography 38:541-545. CrossRef Ao, Q., H. Li, L. Yang, Q. Li, F. Long, Y. Xiao & W. Zuo 2025. Projecting the global potential distribution of nine Rhododendron subgenus Hymenanthes species under different climate change scenarios. Scientific Reports 15: 3459. CrossRef Barkalov, V.Y. 2009. Flora of the Kuril Islands. Dalnauka, Vladivostok, pp 125-126 (in Russian). [Баркалов В.Ю. 2009. Флора Курильских островов. Владивосток: Дальнаука. С.125-126]. Bogatov, V.V. 2002. Biogeographical problems of the Kuril Archipelago. In: Flora and fauna of Kuril Islands (Materials of International Kuril Island Project) (S.Y. Storozhenko, ed.), pp. 150-165, Dalnauka, Vladivostok (in Russian). [Богатов В.В. 2002. Биогеографические проблемы Курильского архипелага // Растительный и животный мир Курильских островов.(Материалы международного Курильского проекта) / под ред. С.Ю. Стороженко. Владивосток: Дальнаука. С. 150-160]. Bondarchuk, S.N. 2014. Features of flowering and fruiting of Rhododendron fauriei Franch. in the Sikhote-Alin Reserve. In: Current status, development trends, rational use and preservation of the biological diversity of the plant world: materials of the International scientific conference (A.V. Pugachevskii, ed.), pp. 174-177, Ecoperspectiva, Minsk (in Russian). [Бондарчук С.Н. 2014. Особенности цветения и плодоношения Rhododendron fauriei Franch. в Сихотэ-Алинском заповеднике. Текущее состояние, тенденции развития, рациональное использование и сохранение биологического разнообразия растительного мира. Материалы международной конференции / отв. ред. А.В. Пугачевский. Минск: Экоперспектива. С.174-177]. Brown, J.L., D.J. Hill, A.M. Dolan, A.C. Carnaval & A.M. Haywood 2018. PaleoClim, high spatial resolution paleoclimate surfaces for global land areas. Scientifc Data 5:180254. CrossRef Chamberlain, D.F., R. Hyam, G. Argent, G. Fairweather & K.S. Walter 1996. The genus Rhododendron: its classification and synonymy. Royal Botanical Garden of Edinburgh Press Edinburgh, 181 pp. Chung, M.Y., J. Lopez-Pujol & M.G. Chung 2014. Comparative genetic structure between Sedum ussuriense and S. kamtschaticum (Crassulaceae), two stonecrops co-occurring on rocky cliffs. American Journal of Botany 101:46-956. CrossRef CMIP6 Model Description 2021. Coupled Model Intercomparison Project Phase 6 (CMIP6): the current international standard for climate modeling. Available from: https://www.dkrz.de/en/communication/climate-simulations/cmip6-en/the-ssp-scenarios Last accessed 20.01.2026. Cornuet, J.M., P. Pudlo, J. Veyssier, A. Dehne-Garcia, M. Gautier, R. Leblois, J.M. Marin & A. Estoup 2014. DIYABC v2.0: a software to make Approximate Bayesian Computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite Data. Bioinformatics 30: 1187-1189. CrossRef Eremin, V.M. & A.A. Taran (eds) 2019. The Red Data Book of the Sakhalin Region. Plants and fungi. Tehnoprint, Kemerovo, 351 pp. (in Russian). [Красная книга Сахалинской области. Растения и грибы / отв. ред. В.М. Еремин, А.А. Таран. Кемерово: Технопринт, 2019. 351 с.]. Fick, S.E. & R.J. Hijmans 2017. WorldClim 2: New 1-Km Spatial Resolution Climate Surfaces for Global Land Areas. International Journal of Climatology 37:4302-4315. CrossRef Flyagina, I.A. 1985. Features of the structure of rare plant communities of the Kabany tract. In: Sikhote-Alin biosphere region: ecological studies (B.S. Petropavlovskii & A.A. Astafiev, eds), pp. 28-48, Far Eastern Scientific Center of the USSR Academy of Sciences, Vladivostok (in Russian). [Флягина И.А. 1985. Особенности структуры редких растительных сообществ урочища Кабаний. Сихотэ-Алинский биосферный район: экологические исследования / отв. ред. Б.С. Петропавловский, А.А. Астафьев. Владивосток: ДВНЦ АН СССР, 1985. С. 28-48]. GBIF 2026. Global Biodiversity Information Facility (GBIF) occurrence downloads, 19 March 2026. Available at: https://doi.org/10.15468/dl.yc3scn Geltman, D.V. (ed.) 2024. The Red Data Book of Russian Federation. Plants and fungi. Vserossijskii nauchno-issledovatel'skii institut ohrany okruzhayushchei sredy "Ekologiya", Moscow, 944 pp. (in Russian). [Красная книга Российской Федерации (растения и грибы) / отв. ред. Д.В. Гельтман. М.: ВНИИ «Экология». 2024. 944 с.]. Hampe, A. & R.J. Petit 2005. Conserving biodiversity under climate change: the rear edge matters. Ecology Letters 8:461-467. CrossRef Hamrick, J.L. 2004. Response of forest trees to global environmental changes. Forest Ecology and Management 197:323-335. CrossRef Hantemirova, E.V., B. Heinze, S.G. Knyazeva, A.M. Musaev, M. Lascoux & V.L. Semerikov 2017. A new Eurasian phylogeographical paradigm? Limited contribution of southern populations to the recolonization of high latitude populations in Juniperus communis L. (Cupressaceae). Journal of Biogeography 44:271-282. CrossRef Harmaja, H. 1991. Taxonomic notes on Rhododendron subsection Ledum (Ledum, Ericaceae), with a key to its species. Annales Botanici Fennici 28(2):171-173. Hirao, A.S. 2010. Kinship between parents reduces offspring fitness in a natural population of Rhododendron brachycarpum. Annals of Botany 105: 637-646. CrossRef Igarashi, Y. 2010. Vegetation and climate history in Sakhalin and Hokkaido: Migration, rise and fall of plants inferred from pollen records. The Quaternary Research 49:241-253. CrossRef Ikeda, H. & H. Setoguchi 2013. A multilocus sequencing approach reveals the cryptic phylogeographical history of Phyllodoce nipponica Makino (Ericaceae). Biology Journal of the Linnean Society 110:214-226. CrossRef Ikeda, H., H. Higashi, V. Yakubov, V. Barkalov & H. Setoguchi 2014. Phylogeographical study of the alpine plant Cassiope lycopodioides (Ericaceae) suggests a range connection between the Japanese archipelago and Beringia during the Pleistocene. Biology Journal of the Linnean Society. 113:497-509. CrossRef Ikeda, H., V. Yakubov, V. Barkalov & H. Setoguchi 2018. Post-glacial East Asian origin of the alpine shrub Phyllodoce aleutica (Ericaceae) in Beringia. Journal of Biogeography 45:1261-1274. CrossRef Ikeda, H. 2023. Virtual issue: phylogeographic studies in the Japanese Archipelago: from geographic patterns of genetic variation to biodiversity in plants. Journal of Plant Research 136:581-585. CrossRef Japan Meteorological Agency 2025. Available at: https://www.jma.go.jp/jma/indexe.html Last accessed 20.01.2026. Korotky, A.M., V.G. Volkova, T.A. Grebennikova, N.G. Razzhigaeva, V.S. Pushkar, L.A. Ganzei & L.M. Mokhova 1999. The Far East. In: Climate and Environment Changes during the last 65 million years (Cenozoic: from Paleocene to Holocene) (A.A. Velichko, ed.), pp. 146-159, Geos, Moscow (in Russian). [Короткий А.М., Волкова В.Г., Гребенникова Т.А., Разжигаева Н.Г., Пушкарь В.С., Ганзей Л.А., Мохова Л.М. 1999. Дальний Восток // Изменение климата и ландшафтов за последние 65 млн. лет (Кайнозой: от палеоцена до голоцена) / отв. ред. А.А. Величко. М: Геос. С.146-159]. Kozhevnikov, A.E. (ed.) 2008. The Red Data Book of Primorskii Territory: Plants. Rare and endangered species of plants and fungi. Apelsin, Vladivostok, 688 pp. (in Russian). [Красная книга Приморского края: растения. Редкие и находящиеся под угрозой исчезновения виды растений и грибов / отв. ред. А.Е. Кожевников. Владивосток: АВК «Апельсин». 2008. 688 с.]. Krestov, P.V., V.Y. Barkalov, A.M. Omelko, V.V. Yakubov, Y. Nakamura & K. Sato 2009. Relic vegetation complexes in the modern refugia of Northeast Asia. V.L. Komarov Memorial Lectures 56:5-63 (in Russian) [Крестов П.В., Баркалов В.Ю., Омелько А.М., Якубов В.В., Накамура Ю., Сато К. 2009. Реликтовые комплексы растительности современных рефугиумов северо-восточной Азии // Комаровские чтения. Вып. 56. С. 5-63]. Lee, B.C. 2009. Rare plants data book of Korea. Korean National arboretum. Geobook Publishing Co., Pocheon. 296 pp. Lee, B.C. & I.S. Shim 2011 Environmental and ecological characteristics distribution of natural growth region in Rhododendron brachycarpum. Journal of the Environmental Sciences 10:1319-1328 (in Korean) CrossRef Lee, S.W., Y.M. Kim, W.W. Kim, S.S. Jang & J.M. Chung 2002. Genetic variation and structure of Rhododendron brachycarpum D. Don, a rare and endangered tree species in Korea. Silvae Genetica 51:215-219. Lesica, P. & F. Allendorf 1995. When are peripheral populations valuable for conservation. Conservation Biology 9:753-760 CrossRef Li, K.J., X.F. Liu, J.H. Zhang, X.L. Zhou, L. Yang & S.K. Shen 2023. Complexity responses of Rhododendron species to climate change in China reveal their urgent need for protection. Forest Ecosystems 10: 100124. CrossRef Li, Y.C., A.B. Korol, T. Fahima, A. Beiles & E. Nevo 2002. Microsatellites: genomic dis-tribution, putative functions and mutational mechanisms: a review. Molecular Ecology 11:2453-2465. CrossRef Linnik, E.V., G.V. Degtjareva, S.V. Efimov, T.I. Varlygina & E.I. Terentieva 2020. Preliminary results of monitoring of Rhododendron brachycarpum D. Don ex G. Don fil. in Kunashir Island (Sakhalin Region). Problemy botaniki Yuzhnoi Sibiri i Mongolii 19(2):71-75 (in Russian). [Линник Е.В., Дегтярева Г.В., Ефимов С.В., Варлыгина Т.И., Терентьева Е.И. 2020. Предварительные итоги мониторинга рододендрона короткоплодного (Rhododendron brachycarpum D. Don ex G. Don на острове Кунашир (Сахалинская область) // Проблемы ботаники Южной Сибири и Монголии. Т. 19, № 2. С. 71-75]. CrossRef Malysheva, V.F., V.A. Dudka, E.F. Malysheva & S.N. Bondarchuk 2026. Fungi Seifertia sikhotensis - a new species, and Synnemapestaloides rhododendri - a new record for Russia, causing blight disease of Rhododendron brachycarpum subsp. fauriei in the Central Sikhote-Alin. Botanica Pacifica 15(2):15201. CrossRef Mazurenko, M.T. 1980. Rhododendrons of the Far East (structure and morphogenesis). Nauka, Moscow, 231 pp. (in Russian). [Мазуренко М.Т. 1980. Рододендроны Дальнего Востока (cтруктура и морфогенез). Москва: Наука. 231с.]. Milne, R.I. 2004. Phylogeny and biogeography of Rhododendron subsection Pontica, a group with a tertiary relict distribution. Molecular Phylogenetics and Evolution 33:389-401. CrossRef Milne, R.I., C. Davies, R. Prickett, L.H. Inns & D.F. Chamberlain 2010. Phylogeny of Rhododendron subgenus Hymenanthes based on chloroplast DNA markers: betweenlineage hybridisation during adaptive radiation? Plant Systematics and Evolution 285:233-244. CrossRef Naganuma, Y., H. Sakio & T. Masuzawa 2006. Comparison of community structure and growth between the alpine dwarf shrubs Rhododendron aureum and R. brachycarpum on the Yatsugatake range, central Japan. Japan Journal of Forest Environment 48:77−84. Ohwi, J. 1965. Flora of Japan. Smithsonian Institution, Washington, 1077 pp. Park, Y.H., S.Y. Shin, H. Choi, J.H. Lee, Y.J. Kim, S.J. Woo, W.R. Im & S.H. Jeon 2025. Anti-influenza A virus activity of Rhododendron brachycarpum extract and identification of hyperoside as the active constituent. Microbiology Research 16:132. CrossRef Phillips, S.J., R.P. Anderson & R.E. Schapire 2006. Maximum entropy modeling of species geographic distributions. Ecological Modelling 190:231-259. CrossRef Polezhaeva, M.A., E.A. Marchuk, M.V. Modorov, M.N. Ranyuk, S.N. Bondarchuk, T. Fukuda, S.C. Kim & C. Hojnowski 2021a. Insights into the genetic diversity and population structure of Rhododendron brachycarpum (Ericaceae) in East Asia as characterized by SSR markers. Plant Systematics and Evolution 307:9. CrossRef Polezhaeva, M.A., N.A. Tikhonova, E.A. Marchuk, M.V. Modorov, M.N. Ranyuk, A.N. Polezhaev, N.K. Badmayeva & V.L. Semerikov 2021b. Genetic structure of a widespread alpine shrub Rhododendron aureum (Ericaceae) across East Asia. Journal of Plant Research 134:91-104. CrossRef Polezhaeva, M.A., D.R. Iunusova, D.N. Shuvaev, E.A. Marchuk & S.M. Ickert-Bond 2025. Biogeography of Therorhodion in Northeast Asia and Western North America emphasizing their past and future expansion. Journal of Biogeography 52:e70024. CrossRef R Core Development Team 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. Available at: http://www.Rproject.org Semerikov, V.L. & S.A. Semerikova 2023. Genetic variation and population history of three related fir species Abies sachalinensis, A. nephrolepis and A. gracilis (Pinaceae) revealed by nuclear microsatellites. Botanica Pacifica 12:145-154. Shemetova, N.S. 1970. Rhododendron fauriei Franch. - a new species for the flora of the continental part of the Far East. Botanicheskii Zhurnal 55:550-551 (in Rissian). [Шеметова Н.С. 1970. Rhododendron fauriei French - новый вид для материковой части Дальнего Востока // Ботанический журнал. Т. 55, № 4. С. 550-551]. Shrestha, N., Z. Wang, X. Su, X. Xu, L. Lyu, Y. Liu, D. Dimitrov, J.D. Kennedy, Q. Wang, Z. Tang & X. Feng 2018. Global patterns of Rhododendron diversity: The role of evolutionary time and diversification rates. Global Ecology and Biogeography 27:913-924. CrossRef Swofford, D.L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Mass. Taberlet, P., L. Fumagalli, A.G. Wust-Saucy & J.F. Cosson 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 74:53-64. CrossRef Takahara, H., S. Ikeda, N. Sasaki & R. Hayashi 2023. Vegetation history of Cryptomeria japonica in Japan since the last interglacial period. Ecological Research 38:49-63. CrossRef Tamura, K., G. Stecher & S. Kumar 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution 38:3022-3027. CrossRef Terentieva, E.I., G.V. Degtjareva, E.V. Linnik, T.H. Samigullin & T.I. Varlygina 2025. On the issue of species independence of Rhododendron fauriei (Ericaceae). Bulleten' Moskovskogo obshchestva ispytatelei prirody. Otdel Biologicheskii 130(5):23-42 (in Russian). [Терентьева Е.И., Дегтярева Г.В., Линник Е.В., Самигуллин Т.Х., Варлыгина Т.И. 2025. К вопросу о видовой самостоятельности Rhododendron fauriei (Ericaceae) // Бюллетень МОИП. Отдел биол. Т. 130, вып. 5. С. 23-42]. CrossRef Tzedakis, P.C., I.T. Lawson, M.R. Frogley, G.M. Hewitt & R. Preece 2002. Buffered tree population changes in a Quaternary refugium: evolutionary implications. Science 297:2044-2047. CrossRef Vranckx, G., H. Jacquemyn, B. Muys & O. Honnay 2012. Meta-analysis of susceptibility of woody plants to loss of genetic diversity through habitat fragmentation. Conservation Biology 26: 228-237. CrossRef Vrishch, D.L. & T.V. Rodnova 2004. Features of the development of Rhododendron brachycarpum D. Don (R. fauriei Franch.) in nature and under cultural conditions. Vestnik DVO RAN 4:78-84 (in Russian). [Врищ Д.Л., Роднова Т.В. 2004. Особенности развития Rhododendron brachycarpum D. Don (R. fauriei Franch.) в природе и в условиях культуры // Вестник ДВО РАН. Вып. 4. С. 78-84]. Vrishch, D.L., L.I. Varchenko & V.M. Urusov 2010. Rhododendron (Rhododendron L.) genus on Sikhote-Alin: geography, ecology, genesis, economic prospects. Vestnik Krasnoyarskogo agrarnogo universiteta 10:64-71 (in Russian). [Врищ Д.Л., Варченко Л.И., Урусов В.М. 2010. Род рододендрон (Rhododendron L.) на Сихотэ-Алине: география, экология, генезис, хохяйственные перспективы // Вестник Красноярского аграрного университета. № 10. С. 64-71]. Xia, X.M., M.Q. Yang, C.L. Li, S.X. Huang, W.T. Jin, F. Wang, X.H. Li, W. Yoichi, Y.R. Zheng & X.Q. Wang 2022. Spatiotemporal evolution of the global species diversity of Rhododendron. Molecular Biology and Evolution 39:msab314. CrossRef Yu, F., T. Wang, T. Groen, A. Skidmore, X. Yang, K. Ma & Z. Wu 2019. Climate and land use changes will degrade the distribution of Rhododendrons in China. Science of The Total Environment 659:515-528. CrossRef
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